Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs77370907 chr8:144664975 G/C 7.41E-5 492 30.77 32.23 33.58 KM Plot
PRAD rs7738829 chr6:18361317 A/G 9.84E-6 494 20.5 30.57 31.3 KM Plot
PRAD rs7743323 chr6:7195684 A/G 0.00015 494 29.63 27.97 32.42 KM Plot
PRAD rs77439841 chr11:129948592 T/G 2.06E-6 492 30.87 32.22 22.8 KM Plot
PRAD rs77448481 chr20:61711649 C/T 1.85E-5 492 31 28.97 20.93 KM Plot
PRAD rs77472198 chr1:1159024 C/T 3.24E-10 483 31.27 30.73 13.73 KM Plot
PRAD rs77474267 chr7:135098679 G/A 2.09E-9 491 30.8 31.33 3.03 KM Plot
PRAD rs77501100 chr9:72833057 A/C 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs77502360 chr5:154270019 A/G 0 494 29.8 35.57 4.87 KM Plot
PRAD rs7751972 chr6:97521664 A/G 7.29E-5 494 30.27 29.6 31.27 KM Plot
PRAD rs77523317 chr11:129949721 T/C 2.05E-6 492 30.8 33.13 22.8 KM Plot
PRAD rs7753392 chr6:168106189 A/C 1.71E-13 486 31.65 27.37 28.13 KM Plot
PRAD rs77549070 chr2:47161789 C/T 6.12E-6 494 30.8 32.4 36.77 KM Plot
PRAD rs77588533 chr5:171531164 T/C 1.66E-7 493 30.87 32 13.17 KM Plot
PRAD rs77591303 chr20:61679197 C/T 7.13E-6 490 30.97 32.22 24.15 KM Plot